Singularity Environment Building

Yunran Chen

2019-04-22

I build the docker image based on docker://openblasr/base. I follow the following steps:

• Pull the openblasr/base docker image.

docker pull openblasr/base

• Run the docker interactively on Ubuntu and install packages in R. Named the docker container yunran/prml.

docker run -it --name yunran/prml openblasr/base  /bin/bas
R
install.packages("dplyr")
install.packages("statmod")
install.packages("devtools")
devtools::install_github("yunranchen/prml",force=TRUE)
4

• Push the docker image to the docker hub.

docker run -it --rm openblasr/base  /bin/bash
docker push yunran/prml:latest

• Write a Dockerfile to enable the entry to be R script directly. Build the docker image based on the docker file. For Dockerfile, see my github https://github.com/YunranChen/docker-prml.

 docker pull yunran/prml
 docker build - < Dockerfile -t yunran/prml:latest
 docker push yunran/prml:latest